Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs144834613 chr17:1420447 C/CGGCT 1.74E-5 172 25.47 25.87 1.2 KM Plot
PCPG rs144841076 chr12:124038455 CTAAT/C 0.000484 172 25.87 19.2 20.13 KM Plot
PCPG rs144865423 chr10:50529337 CAAGT/C 3.6E-6 176 24.52 35.5 25.17 KM Plot
PCPG rs144886737 chr9:36129215 TCTC/T 0 176 25.53 26.05 2.93 KM Plot
PCPG rs144942369 chr7:105163931 A/G 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs145013992 chr10:69733697 G/A 0 177 25.87 18.2 2.28 KM Plot
PCPG rs145098995 chr9:86432404 C/A 0.000168 171 26.57 23.43 14.47 KM Plot
PCPG rs145286577 chr12:56715584 G/A 1.01E-7 177 25.35 29.13 0.8 KM Plot
PCPG rs145305594 chr2:118525376 C/T 1.5E-5 178 25 30.33 11.65 KM Plot
PCPG rs145344160 chr8:53846426 T/TGGCAAATTTGAA 5.59E-5 171 24.47 27.2 20 KM Plot
PCPG rs145429157 chr7:158655672 C/G 0 176 25.53 19.83 3.17 KM Plot
PCPG rs145469499 chr1:66916509 G/GA 9.06E-9 175 25.6 23.82 3.17 KM Plot
PCPG rs145595621 chr6:147376375 CT/C 7.61E-6 176 25.67 19.72 4.67 KM Plot
PCPG rs1456690 chr6:122600775 A/T 4.52E-6 174 27.3 21.95 15.08 KM Plot
PCPG rs145812054 chr2:118585588 C/T 1.92E-5 176 25.17 25.97 11.65 KM Plot